Publications

2018

The Sparse Manifold Transform

Advances in Neural Information Processing Systems (NIPS 2018), 10534-10545
X

@inproceedings{chen2018sparse,
title={The Sparse Manifold Transform},
author={Chen, Yubei and Paiton, Dylan M. and Olshausen, Bruno A.},
booktitle={Advances in neural information processing systems},
pages = {10534–10545},
year = {2018}
}

Citation PDF Supplementary Material

Generalization Challenges for Neural Architectures in Audio Source Separation

arXiv (2018), (ICASSP Submission)
X

@article{mobin2018convolutional,
title={Convolutional vs. Recurrent Neural Networks for Audio Source Separation},
author={Mobin, Shariq and Cheung, Brian and Olshausen, Bruno},
journal={arXiv preprint arXiv:1803.08629},
year={2018}
}

Citation arXiv

A Theory of Sequence Indexing and Working Memory in Recurrent Neural Networks

Neural Computation (2018), 30(6), 1449-1513.
X

@article{frady2018theory,
title={A theory of sequence indexing and working memory in recurrent neural networks},
author={Frady, E Paxon and Kleyko, Denis and Sommer, Friedrich T},
journal={Neural Computation},
number={30(6)},
pages={1449-1513},
year={2018},
publisher={MIT Press}
}

Citation PDF Neural Computation

The High-Dimensional Geometry of Binary Neural Networks

International Conference on Learning Representations (ICLR 2018)
X

@inproceedings{anderson18binary,
author = {Alexander. G. Anderson and Cory. P. Berg},
booktitle = {Proceedings of the International Conference on Learning Representations (ICLR)},
title = {The High-Dimensional Geometry of Binary Neural Networks},
year = {2018}
}

Citation Code arXiv

Joint Source-Channel Coding with Neural Networks for Analog Data Compression and Storage

Data Compression Conference (DCC 2018)
X

@inproceedings{zarcone2018joint,
  title={Joint Source-Channel Coding with Neural Networks for Analog Data Compression and Storage},
  author={Zarcone, Ryan and Paiton, Dylan and Anderson, Alex and Engel, Jesse and Wong, HS Philip and Olshausen, Bruno},
  booktitle={2018 Data Compression Conference},
  year={2018},
  organization={IEEE}
}

Citation IEEE

Active State Organization of Spontaneous Behavioral Patterns

Nature Scientific Reports (2018), 8(1064)
X

@article{hillar2018active,
title={Active State Organization of Spontaneous Behavioral Patterns},
author={Hillar, C. and Onnis, G. and Rhea, D. and Tecott, L.},
journal={Nature Scientific Reports},
year={2018},
volume={8},
number={1064}
}

Citation PDF

Robust Exponential Memory in Hopfield Networks

The Journal of Mathematical Neuroscience (2018), 8(1), 1
X

@article{hillar2018robust,
title={Robust Exponential Memory in Hopfield Networks},
author={Hillar, Christopher J. and Tran, Ngoc M.},
journal={The Journal of Mathematical Neuroscience},
year={2018},
volume={8},
number={1},
pages={1}
}

Citation PDF

2017

Hyperdimensional Computing for Blind and One-Shot Classification of EEG Error-Related Potentials

ACM Mobile Networks and Applications (2017), 1-12
X

@Article{rahimi2017hyperdimensional,
title={Hyperdimensional Computing for Blind and One-Shot Classification of EEG Error-Related Potentials},
author={Rahimi, Abbas and Tchouprina, Artiom and Kanerva, Pentti and Mill{\’a}n, Jos{\’e} del R. and Rabaey, Jan M.},
journal={Mobile Networks and Applications},
publisher={ACM (Springer)},
pages={1-12},
year={2017},
month={Oct},
day={03},
issn={1572-8153},
doi={10.1007/s11036-017-0942-6}
}

Citation PDF

High-dimensional computing as a nanoscalable paradigm

IEEE Transactions on Circuits and Systems I: Regular Papers (2017), 64(9), 2508-2521
X

@article{rahimi2017high,
title={High-dimensional computing as a nanoscalable paradigm},
author={Rahimi, Abbas and Datta, Sohum and Kleyko, Denis and Frady, Edward Paxon and Olshausen, Bruno and Kanerva, Pentti and Rabaey, Jan M},
journal={IEEE Transactions on Circuits and Systems I: Regular Papers},
volume={64},
number={9},
pages={2508–2521},
year={2017},
publisher={IEEE}
}

Citation PDF

Minimum and maximum entropy distributions for binary systems with known means and pairwise correlations

Entropy (2017), 19(8), 427
X

@article{albanna2017minimum,
title={Minimum and maximum entropy distributions for binary systems with known means and pairwise correlations},
author={Albanna, B. and Hillar, C. and Sohl-Dickstein, J. and DeWeese, M.},
journal={Entropy},
volume={19},
number={8},
pages={427},
year={2017},
publisher={Multidisciplinary Digital Publishing Institute}
}

Citation PDF

Sparse codes from memristor grids

Nature Nanotechnology (2017), 12(8)
X

@article{olshausen2017sparse,
title={Sparse codes from memristor grids},
author={Olshausen, Bruno A and Rozell, Christopher J},
journal={Nature nanotechnology},
volume={12},
number={8},
pages={722},
year={2017},
publisher={Nature Publishing Group}
}

Citation PDF

Annealed Generative Adversarial Networks

arXiv preprint (2017), arXiv:1705.07505
X

@article{mehrjou2017annealed,
title={Annealed Generative Adversarial Networks},
author={Mehrjou, Arash and Sch{\”o}lkopf, Bernhard and Saremi, Saeed},
journal={arXiv preprint arXiv:1705.07505},
year={2017}
}

Citation arXiv

Emergence of foveal image sampling from learning to attend in visual scenes

International Conference on Learning Representations (ICLR 2017)
X

@inproceedings{cheung2017emergence,
title={Emergence of foveal image sampling from learning to attend in visual scenes},
author={Cheung, Brian and Weiss, Eric and Olshausen, Bruno},
booktitle={International Conference on Learning Representations (ICLR)},
year={2017}
}

Citation PDF

Revisiting Perceptual Distortion for Natural Images: Mean Discrete Structural Similarity Index

IEEE Data Compression Conference (DCC 2017), 241-249
X

@inproceedings{hillar2017revisiting,
title={Revisiting Perceptual Distortion for Natural Images: Mean Discrete Structural Similarity Index},
author={Hillar, Christopher and Marzen, Sarah},
booktitle={Data Compression Conference (DCC), 2017},
pages={241–249},
year={2017},
organization={IEEE}
}

Citation PDF

Neural network coding of natural images with applications to pure mathematics

Algebraic and Geometric Methods in Discrete Mathematics (2017), 685, 189
X

@article{hillar2017neural,
title={Neural network coding of natural images with applications to pure mathematics},
author={Hillar, Christopher J and Marzen, Sarah E},
journal={Algebraic and Geometric Methods in Discrete Mathematics},
volume={685},
pages={189},
year={2017},
publisher={American Mathematical Soc.}
}

Citation Reprint

Opportunities for analog coding in emerging memory systems

arXiv preprint (2017), arXiv:1701.06063
X

@article{engel2017opportunities,
title={Opportunities for analog coding in emerging memory systems},
author={Engel, Jesse H. and Eryilmaz, S. Burc and Kim, SangBum and BrightSky, Matthew and Lam, Chung and Lung, Hsiang-Lan and Olshausen, Bruno A. and Wong, H.-S. Philip},
journal={arXiv preprint arXiv:1701.06063},
year={2017}
}

Citation arXiv

2016

Weak universality in sensory tradeoffs

Physical Review E (2016), 94(6), 060101
X

@article{marzen2016weak,
title={Weak universality in sensory tradeoffs},
author={Marzen, Sarah and DeDeo, Simon},
journal={Physical Review E},
volume={94},
number={6},
year={2016}
}

Citation PDF

A neural model of high-acuity vision in the presence of fixational eye movements

IEEE Asilomar Conference on Signals, Systems, and Computers (2016), 588-592
X

@inproceedings{anderson2016neural,
title={A neural model of high-acuity vision in the presence of fixational eye movements},
author={Anderson, Alexander G and Olshausen, Bruno A and Ratnam, Kavitha and Roorda, Austin},
booktitle={Signals, Systems and Computers, 2016 50th Asilomar Conference on},
pages={588–592},
year={2016},
organization={IEEE}
}

Citation PDF

Language Geometry Using Random Indexing

International Symposium on Quantum Interaction (2016), 265-274
X

@inproceedings{joshi2016language,
title={Language geometry using random indexing},
author={Joshi, Aditya and Halseth, Johan T and Kanerva, Pentti},
booktitle={International Symposium on Quantum Interaction},
pages={265–274},
year={2016},
organization={Springer}
}

Citation PDF

Predictive rate-distortion for infinite-order Markov processes

Journal of Statistical Physics (2016), 163(6), 1312-1338
X

@article{marzen2016predictive,
title={Predictive rate-distortion for infinite-order Markov processes},
author={Marzen, Sarah E and Crutchfield, James P},
journal={Journal of Statistical Physics},
volume={163},
number={6},
pages={1312–1338},
year={2016},
publisher={Springer}
}

Citation PDF

DeepMovie: Using Optical Flow and Deep Neural Networks to Stylize Movies

arXiv preprint (2016), arXiv:1605.08153
X

@article{anderson2016deepmovie,
title={DeepMovie: Using Optical Flow and Deep Neural Networks to Stylize Movies},
author={Anderson, Alexander G and Berg, Cory P and Mossing, Daniel P and Olshausen, Bruno A},
journal={arXiv preprint arXiv:1605.08153},
year={2016}
}

Citation arXiv

Direct imaging of hippocampal epileptiform calcium motifs following kainic acid administration in freely behaving mice

Frontiers in neuroscience (2016), 10, 53
X

@article{berdyyeva2016direct,
title={Direct imaging of hippocampal epileptiform calcium motifs following kainic acid administration in freely behaving mice},
author={Berdyyeva, Tamara K and Frady, E Paxon and Nassi, Jonathan J and Aluisio, Leah and Cherkas, Yauheniya and Otte, Stephani and Wyatt, Ryan M and Dugovic, Christine and Ghosh, Kunal K and Schnitzer, Mark J and Lovenberg, Timothy and Bonaventure, Pascal},
journal={Frontiers in neuroscience},
volume={10},
pages={53},
year={2016},
publisher={Frontiers}
}

Citation PDF

2015

Neurodata without borders: creating a common data format for neurophysiology

Neuron (2015), 88(4), 629-634
X

@article{teeters2015neurodata,
title={Neurodata without borders: creating a common data format for neurophysiology},
author={Teeters, Jeffery L and Godfrey, Keith and Young, Rob and Dang, Chinh and Friedsam, Claudia and Wark, Barry and Asari, Hiroki and Peron, Simon and Li, Nuo and Peyrache, Adrien and others},
journal={Neuron},
volume={88},
number={4},
pages={629–634},
year={2015},
publisher={Elsevier}
}

Citation PDF

When can dictionary learning uniquely recover sparse data from subsamples?

IEEE Transactions on Information Theory (2015), 61(11), 6290-6297
X

@article{hillar2015can,
title={When can dictionary learning uniquely recover sparse data from subsamples?},
author={Hillar, Christopher J and Sommer, Friedrich T},
journal={IEEE Transactions on Information Theory},
volume={61},
number={11},
pages={6290–6297},
year={2015},
publisher={IEEE}
}

Citation PDF

Discovery of salient low-dimensional dynamical structure in neuronal population activity using hopfield networks

International Workshop on Similarity-Based Pattern Recognition (2015), 199-208
X

@inproceedings{effenberger2015discovery,
title={Discovery of salient low-dimensional dynamical structure in neuronal population activity using hopfield networks},
author={Effenberger, Felix and Hillar, Christopher},
booktitle={International Workshop on Similarity-Based Pattern Recognition},
pages={199–208},
year={2015},
organization={Springer}
}

Citation PDF

Exploring discrete approaches to lossy compression schemes for natural image patches

IEEE European Conference on Signal Processing (EUSIPCO 2015), 2236-2240
X

@inproceedings{mehta2015exploring,
title={Exploring discrete approaches to lossy compression schemes for natural image patches},
author={Mehta, Ram and Marzen, Sarah and Hillar, Christopher},
booktitle={Signal Processing Conference (EUSIPCO), 2015 23rd European},
pages={2236–2240},
year={2015},
organization={IEEE}
}

Citation PDF

Time resolution dependence of information measures for spiking neurons: Scaling and universality

Frontiers in computational neuroscience (2015), 9
X

@article{marzen2015time,
title={Time resolution dependence of information measures for spiking neurons: Scaling and universality},
author={Marzen, Sarah E and DeWeese, Michael R and Crutchfield, James P},
journal={Frontiers in computational neuroscience},
volume={9},
year={2015},
publisher={Frontiers Media SA}
}

Citation PDF

Robust discovery of temporal structure in multi-neuron recordings using Hopfield networks

Procedia Computer Science (2015), 53, 365-374
X

@article{hillar2015robust,
title={Robust discovery of temporal structure in multi-neuron recordings using Hopfield networks},
author={Hillar, Christopher and Effenberger, Felix},
journal={Procedia Computer Science},
volume={53},
pages={365–374},
year={2015},
publisher={Elsevier}
}

Citation PDF

Informational and causal architecture of discrete-time renewal processes

Entropy (2015), 17(7), 4891-4917
X

@article{marzen2015informational,
title={Informational and causal architecture of discrete-time renewal processes},
author={Marzen, Sarah E and Crutchfield, James P},
journal={Entropy},
volume={17},
number={7},
pages={4891–4917},
year={2015},
publisher={Multidisciplinary Digital Publishing Institute}
}

Citation PDF

Rats Exert Executive Control

Neuron (2015), 86(6), 1324-1326
X

@article{carels2015rats,
title={Rats Exert Executive Control},
author={Carels, Vanessa M and DeWeese, Michael R},
journal={Neuron},
volume={86},
number={6},
pages={1324–1326},
year={2015},
publisher={Elsevier}
}

Citation PDF

A device for human ultrasonic echolocation

IEEE Transactions on Biomedical Engineering (2015), 62(6), 1526-1534
X

@article{sohl2015device,
title={A device for human ultrasonic echolocation},
author={Sohl-Dickstein, Jascha and Teng, Santani and Gaub, Benjamin M and Rodgers, Chris C and Li, Crystal and DeWeese, Michael R and Harper, Nicol S},
journal={IEEE Transactions on Biomedical Engineering},
volume={62},
number={6},
pages={1526–1534},
year={2015},
publisher={IEEE}
}

Citation PDF

Signatures of infinity: Nonergodicity and resource scaling in prediction, complexity, and learning

Physical Review E (2015), 91(5), 050106
X

@article{crutchfield2015signatures,
title={Signatures of infinity: Nonergodicity and resource scaling in prediction, complexity, and learning},
author={Crutchfield, James P and Marzen, Sarah},
journal={Physical Review E},
volume={91},
number={5},
pages={050106},
year={2015},
publisher={APS}
}

Citation PDF

Discovering Hidden Factors of Variation in Deep Networks

International Conference on Learning Representations (ICLR 2015), workshop
X

@inproceedings{cheung2015discovering,
title={Discovering Hidden Factors of Variation in Deep Networks},
author={Cheung, B. and Livezey, J.A. and Bansal, A.K. and Olshausen, B.A.},
booktitle={International Conference on Learning Representations (ICLR 2015), Workshop},
year={2015}
}

Citation arXiv

Stereopsis is adaptive for the natural environment

Science Advances (2015), 1(4), e1400254
X

@article{sprague2015stereopsis,
title={Stereopsis is adaptive for the natural environment},
author={Sprague, William W and Cooper, Emily A and To{\v{s}}i{\’c}, Ivana and Banks, Martin S},
journal={Science Advances},
volume={1},
number={4},
pages={e1400254},
year={2015},
publisher={American Association for the Advancement of Science}
}

Citation PDF

A Hadamard-type lower bound for symmetric diagonally dominant positive matrices

Linear Algebra and its Applications (2015), 472, 135-141
X

@article{hillar2015hadamard,
title={A Hadamard-type lower bound for symmetric diagonally dominant positive matrices},
author={Christopher J. Hillar and Andre Wibisono},
journal={Linear Algebra and its Applications},
volume={472},
pages={135 – 141},
year={2015}
}

Citation PDF

ViSAPy: A Python tool for biophysics-based generation of virtual spiking activity for evaluation of spike-sorting algorithms

Journal of neuroscience methods (2015), 245, 182-204
X

@article{hagen2015visapy,
title={ViSAPy: A Python tool for biophysics-based generation of virtual spiking activity for evaluation of spike-sorting algorithms},
author={Hagen, Espen and Ness, Torbj{\o}rn V and Khosrowshahi, Amir and S{\o}rensen, Christina and Fyhn, Marianne and Hafting, Torkel and Franke, Felix and Einevoll, Gaute T},
journal={Journal of neuroscience methods},
volume={245},
pages={182–204},
year={2015},
publisher={Elsevier}
}

Citation PDF

Deep unsupervised learning using nonequilibrium thermodynamics

arXiv preprint (2015), arXiv:1503.03585
X

@article{sohl2015deep,
title={Deep unsupervised learning using nonequilibrium thermodynamics},
author={Sohl-Dickstein, Jascha and Weiss, Eric A and Maheswaranathan, Niru and Ganguli, Surya},
journal={arXiv preprint arXiv:1503.03585},
year={2015}
}

Citation arXiv

2014

Understanding and Designing Complex Systems: Response to "A framework for optimal high-level descriptions in science and engineering--preliminary report"

arXiv preprint (2014), arXiv:1412.8520
X

@article{crutchfield2014understanding,
title={Understanding and Designing Complex Systems: Response to “A framework for optimal high-level descriptions in science and engineering–preliminary report”},
author={Crutchfield, James P. and James, Ryan G. and Marzen, Sarah and Varn, Dowman P.},
journal={arXiv preprint arXiv:1412.8520},
year={2014}
}

Citation arXiv

Capacity optimization of emerging memory systems: A shannon-inspired approach to device characterization

IEEE International Electron Devices Meeting (IEDM 2014), 29.4.1-29.4.4
X

@inproceedings{engel2014capacity,
title={Capacity optimization of emerging memory systems: A shannon-inspired approach to device characterization},
author={Engel, Jesse H and Eryilmaz, S Burc and Kim, SangBum and BrightSky, Matthew and Lam, Chung and Lung, Hsiang-Lan and Olshausen, Bruno A and Wong, H-S Philip},
booktitle={Electron Devices Meeting (IEDM), 2014 IEEE International},
pages={29–4},
year={2014},
organization={IEEE}
}

Citation PDF

Scalable inference for neuronal connectivity from calcium imaging

Advances in Neural Information Processing Systems (NIPS 2014), 2843-2851
X

@inproceedings{fletcher2014scalable,
title={Scalable inference for neuronal connectivity from calcium imaging},
author={Fletcher, Alyson K and Rangan, Sundeep},
booktitle={Advances in Neural Information Processing Systems},
pages={2843–2851},
year={2014}
}

Citation PDF

Information-based learning by agents in unbounded state spaces

Advances in Neural Information Processing Systems (NIPS 2014), 3023-3031
X

@inproceedings{mobin2014information,
title={Information-based learning by agents in unbounded state spaces},
author={Mobin, Shariq A and Arnemann, James A and Sommer, Friedrich},
booktitle={Advances in Neural Information Processing Systems},
pages={3023–3031},
year={2014}
}

Citation PDF

The neural code for auditory space depends on sound frequency and head size in an optimal manner

PloS One (2014), 9(11), e108154
X

@article{harper2014neural,
title={The neural code for auditory space depends on sound frequency and head size in an optimal manner},
author={Harper, Nicol S and Scott, Brian H and Semple, Malcolm N and McAlpine, David},
journal={PloS one},
volume={9},
number={11},
pages={e108154},
year={2014},
publisher={Public Library of Science}
}

Citation PDF

Perception as an inference problem

In: The Cognitive Neurosciences, 5th edition (2014), MIT Press
X

@incollection{olshausen2014perception,
title={Perception as an inference problem},
author={Olshausen, Bruno A},
booktitle={The Cognitive Neurosciences V},
editor={Gazzaniga, M. and Mangun, R.},
year={2014},
publisher={MIT Press},
address={Cambridge, MA}
}

Citation PDF

A hopfield recurrent neural network trained on natural images performs state-of-the-art image compression

IEEE International Conference on Image Processing (ICIP 2014), 4092-4096
X

@inproceedings{hillar2014hopfield,
title={A hopfield recurrent neural network trained on natural images performs state-of-the-art image compression},
author={Hillar, Christopher and Mehta, Ram and Koepsell, Kilian},
booktitle={Image Processing (ICIP), 2014 IEEE International Conference on},
pages={4092–4096},
year={2014},
organization={IEEE}
}

Citation PDF

Computing with 10,000-bit words

52nd Annual Allerton Conference on Communication, Control, and Computing (2014), 304-310
X

@inproceedings{kanerva2014computing,
title={Computing with 10,000-bit words},
author={Kanerva, Pentti},
booktitle={Communication, Control, and Computing (Allerton), 2014 52nd Annual Allerton Conference on},
pages={304–310},
year={2014},
organization={IEEE}
}

Citation PDF

Information anatomy of stochastic equilibria

Entropy (2014), 16(9), 4713-4748
X

@article{marzen2014information,
title={Information anatomy of stochastic equilibria},
author={Marzen, Sarah and Crutchfield, James P},
journal={Entropy},
volume={16},
number={9},
pages={4713–4748},
year={2014},
publisher={Multidisciplinary Digital Publishing Institute}
}

Citation PDF

Modeling higher-order correlations within cortical microcolumns

PLoS computational biology (2014), 10(7), e1003684
X

@article{koster2014modeling,
title={Modeling higher-order correlations within cortical microcolumns},
author={K{\”o}ster, Urs and Sohl-Dickstein, Jascha and Gray, Charles M and Olshausen, Bruno A},
journal={PLoS computational biology},
volume={10},
number={7},
pages={e1003684},
year={2014},
publisher={Public Library of Science}
}

Citation PDF

Hamiltonian Monte Carlo Without Detailed Balance

International Conference on Machine Learning (ICML 2014), 719-726
X

@inproceedings{sohl2014hamiltonian,
title={Hamiltonian Monte Carlo Without Detailed Balance},
author={Sohl-Dickstein, Jascha and Mudigonda, Mayur and DeWeese, Michael},
booktitle={International Conference on Machine Learning},
pages={719–726},
year={2014}
}

Citation PDF

Neural correlates of task switching in prefrontal cortex and primary auditory cortex in a novel stimulus selection task for rodents

Neuron (2014), 82(5), 1157-1170
X

@article{rodgers2014neural,
title={Neural correlates of task switching in prefrontal cortex and primary auditory cortex in a novel stimulus selection task for rodents},
author={Rodgers, Chris C and DeWeese, Michael R},
journal={Neuron},
volume={82},
number={5},
pages={1157–1170},
year={2014},
publisher={Elsevier}
}

Citation PDF

Optimal finite-time erasure of a classical bit

Physical Review E (2014), 89(5), 052140
X

@article{zulkowski2014optimal,
title={Optimal finite-time erasure of a classical bit},
author={Zulkowski, Patrick R and DeWeese, Michael R},
journal={Physical Review E},
volume={89},
number={5},
pages={052140},
year={2014},
publisher={APS}
}

Citation PDF

Structural synaptic plasticity has high memory capacity and can explain graded amnesia, catastrophic forgetting, and the spacing effect

PLoS One (2014), 9(5), e96485
X

@article{knoblauch2014structural,
title={Structural synaptic plasticity has high memory capacity and can explain graded amnesia, catastrophic forgetting, and the spacing effect},
author={Knoblauch, Andreas and K{\”o}rner, Edgar and K{\”o}rner, Ursula and Sommer, Friedrich T},
journal={PLoS One},
volume={9},
number={5},
pages={e96485},
year={2014},
publisher={Public Library of Science}
}

Citation PDF

Spatially distributed local fields in the hippocampus encode rat position

Science (2014), 344(6184), 626-630
X

@article{agarwal2014spatially,
title={Spatially distributed local fields in the hippocampus encode rat position},
author={Agarwal, Gautam and Stevenson, Ian H and Ber{\’e}nyi, Antal and Mizuseki, Kenji and Buzs{\’a}ki, Gy{\”o}rgy and Sommer, Friedrich T},
journal={Science},
volume={344},
number={6184},
pages={626–630},
year={2014},
publisher={American Association for the Advancement of Science}
}

Citation PDF Supplement

Learning joint intensity-depth sparse representations

IEEE Transactions on Image Processing (2014), 23(5), 2122-2132
X

@article{tosic2014learning,
title={Learning joint intensity-depth sparse representations},
author={Tosic, Ivana and Drewes, Sarah},
journal={IEEE Transactions on Image Processing},
volume={23},
number={5},
pages={2122–2132},
year={2014},
publisher={IEEE}
}

Citation PDF

Neurosharing: large-scale data sets (spike, LFP) recorded from the hippocampal-entorhinal system in behaving rats

F1000Research (2014), 3(98)
X

@article{mizuseki2014neurosharing,
title={Neurosharing: large-scale data sets (spike, LFP) recorded from the hippocampal-entorhinal system in behaving rats},
author={Mizuseki, Kenji and Diba, Kamran and Pastalkova, Eva and Teeters, Jeff and Sirota, Anton and Buzs{\’a}ki, Gy{\”o}rgy},
journal={F1000Research},
volume={3},
year={2014},
publisher={Faculty of 1000 Ltd}
}

Citation Link

Scene analysis in the natural environment

Frontiers in psychology (2014), 5:199
X

@article{lewicki2014scene,
title={Scene analysis in the natural environment},
author={Lewicki, Michael S and Olshausen, Bruno A and Surlykke, Annemarie and Moss, Cynthia F},
journal={Frontiers in psychology},
volume={5},
year={2014},
publisher={Frontiers Media SA}
}

Citation PDF

Statistical wiring of thalamic receptive fields optimizes spatial sampling of the retinal image

Neuron (2014), 81(4), 943-956
X

@article{martinez2014statistical,
title={Statistical wiring of thalamic receptive fields optimizes spatial sampling of the retinal image},
author={Martinez, Luis M and Molano-Maz{\’o}n, Manuel and Wang, Xin and Sommer, Friedrich T and Hirsch, Judith A},
journal={Neuron},
volume={81},
number={4},
pages={943–956},
year={2014},
publisher={Elsevier}
}

Citation PDF

2013

Optimal control of transitions between nonequilibrium steady states

PLoS one (2013), 8(12), e82754
X

@article{zulkowski2013optimal,
title={Optimal control of transitions between nonequilibrium steady states},
author={Zulkowski, Patrick R and Sivak, David A and DeWeese, Michael R},
journal={PloS one},
volume={8},
number={12},
pages={e82754},
year={2013},
publisher={Public Library of Science}
}

Citation PDF

Learning non-local features for classification using compressed sensing and sparse coding

Advances in Neural Information Processing Systems (NIPS 2013), workshop
X

@inproceedings{mudigonda2013learning,
title={Learning non-local features for classification using compressed sensing and sparse coding},
author={Mudigonda, M. and Muller, N. and Joshi, A. and Hillar, C. and Sommer, F.},
booktitle={Advances in Neural Information Processing Systems (NIPS 2013), Workshop},
year={2013}
}

Citation

Testing our conceptual understanding of V1 function

arXiv preprint (2013), arXiv:1311.0778
X

@article{koster2013testing,
title={Testing our conceptual understanding of V1 function},
author={K{\”o}ster, Urs and Olshausen, Bruno},
journal={arXiv preprint arXiv:1311.0778},
year={2013}
}

Citation arXiv

Most tensor problems are NP-hard

Journal of the ACM (2013), 60(6), 45
X

@article{hillar2013most,
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What Natural Scene Statistics Can Tell Us about Cortical Representation

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Neural oscillatons and synchrony as mechanisms for coding, communication and computation in the visual system

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Inhibitory circuits in the visual thalamus

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Sparse coding models can exhibit decreasing sparseness while learning sparse codes for natural images

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Maximal mutual information, not minimal entropy, for escaping the “Dark Room” (Comment on "Whatever next? Predictive brains, situated agents, and the future of cognitive science." )

Behavioral and Brain Sciences (2013), 36(3), 220-221
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Measuring information in spike trains about intrinsic brain signals

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Up states are rare in awake auditory cortex

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Inhibitory interneurons decorrelate excitatory cells to drive sparse code formation in a spiking model of V1

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Learning and exploration in action-perception loops

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Highly overcomplete sparse coding

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Maximum entropy distributions on graphs

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2012

Dead leaves and the dirty ground: Low-level image statistics in transmissive and occlusive imaging environments

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Efficient and optimal binary Hopfield associative memory storage using minimum probability flow

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Training sparse natural image models with a fast Gibbs sampler of an extended state space

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Neurons in the thalamic reticular nucleus are selective for diverse and complex visual features

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Non-Gaussian statistical properties of breast images

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Geometry of thermodynamic control

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Comment on the article "Distilling free-form natural laws from experimental data"

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20 years of learning about vision: Questions answered, questions unanswered, and questions not yet asked

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Thermodynamics of prediction

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Sparse codes for speech predict spectrotemporal receptive fields in the inferior colliculus

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Learning intermediate-level representations of form and motion from natural movies

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Detecting event-related changes of multivariate phase coupling in dynamic brain networks

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Associative Memory and Learning

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Multivariate Phase--Amplitude cross-frequency coupling in neurophysiological signals

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2011

The laminar organization of V1 neural activity in response to dynamic natural scenes

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New method for parameter estimation in probabilistic models: minimum probability flow

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Building a better probabilistic model of images by factorization

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Inhibitory circuits for visual processing in thalamus

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A sparse coding model with synaptically local plasticity and spiking neurons can account for the diverse shapes of V1 simple cell receptive fields

PLoS computational biology
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Learning sparse representations of depth

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Learning sparse codes for hyperspectral imagery

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Minimum Probability Flow Learning

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year={2011},
editor={Lise Getoor and Tobias Scheffer},
location={Bellevue, Washington, USA},
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How should prey animals respond to uncertain threats?

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Lie group transformation models for predictive video coding

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Thalamic interneurons and relay cells use complementary synaptic mechanisms for visual processing

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2010

The effects of visuospatial attention measured across visual cortex using source-imaged, steady-state EEG

Journal of Vision (2010), 10(14)
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Phase coupling estimation from multivariate phase statistics

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Deciphering subsampled data: adaptive compressive sampling as a principle of brain communication

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Group sparse coding with a laplacian scale mixture prior

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Does the brain de-jitter retinal images?

Proceedings of the National Academy of Sciences (2010), 107(46), 19607-19608
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Recoding of sensory information across the retinothalamic synapse

Journal of Neuroscience (2010), 30(41), 13567-13577
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Oscillatory phase coupling coordinates anatomically dispersed functional cell assemblies

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Exploring the function of neural oscillations in early sensory systems

Frontiers in neuroscience (2010), 4 (focused review)
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Adaptive compressed sensing -- a new class of self-organizing coding models for neuroscience

Acoustics Speech and Signal Processing (ICASSP 2010), 5494-5497
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Applied mathematics: The statistics of style

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Isolating human brain functional connectivity associated with a specific cognitive process

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Memory capacities for synaptic and structural plasticity

Neural Computation (2010), 22(2), 289-341
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An unsupervised algorithm for learning lie group transformations

arXiv preprint (2010), arXiv:1001.1027
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Object Recognition: Physiology and Computational Insights

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2009

Learning transport operators for image manifolds

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Learning bimodal structure in audio-visual data

IEEE Transactions on Neural Networks
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Top-down flow of visual spatial attention signals from parietal to occipital cortex

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Learning transformational invariants from natural movies

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Citation PDF Fig. 2 (video) Fig. 4a (video) Fig. 4b (video) Fig. 4c (video) Fig. 4d (video)

On the maximization of information flow between spiking neurons

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Efficient coding in human auditory perception

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Learning real and complex overcomplete representations from the statistics of natural images

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Hyperdimensional computing: An introduction to computing in distributed representation with high-dimensional random vectors

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Retinal oscillations carry visual information to cortex

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Higher-order scene statistics of breast images

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volume = {7263},
booktitle = {Progress in Biomedical Optics and Imaging – Proceedings of SPIE}
}

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2008

An homotopy algorithm for the Lasso with online observations

Advances in Neural Information Processing Systems (NIPS 2008), 489-496
X

@inproceedings{garrigues2008homotopy,
title={An homotopy algorithm for the Lasso with online observations},
author={Garrigues, Pierre and Ghaoui, Laurent E},
booktitle={Advances in neural information processing systems},
pages={489–496},
year={2008}
}

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Millisecond-scale differences in neural activity in auditory cortex can drive decisions

Nature Neuroscience (2008), 11(11), 1262-1263
X

@article{yang2008millisecond,
title={Millisecond-scale differences in neural activity in auditory cortex can drive decisions},
author={Yang, Yang and DeWeese, Michael R and Otazu, Gonzalo H and Zador, Anthony M},
journal={Nature neuroscience},
volume={11},
number={11},
pages={1262–1263},
year={2008},
publisher={Nature Publishing Group}
}

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Information transmission in oscillatory neural activity

Biological Cybernetics (2008), 99(4-5), 403
X

@article{koepsell2008information,
title={Information transmission in oscillatory neural activity},
author={Koepsell, Kilian and Sommer, Friedrich T},
journal={Biological cybernetics},
volume={99},
number={4-5},
pages={403},
year={2008},
publisher={Springer}
}

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Sparse coding via thresholding and local competition in neural circuits

Neural Computation (2008), 20(10) 2526-2563
X

@article{rozell2008sparse,
title={Sparse coding via thresholding and local competition in neural circuits},
author={Rozell, Christopher J and Johnson, Don H and Baraniuk, Richard G and Olshausen, Bruno A},
journal={Neural computation},
volume={20},
number={10},
pages={2526–2563},
year={2008},
publisher={MIT Press}
}

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Neuroscience and the Study of Literature: Some Thoughts on the Possibility of Transferring Knowledge

Journal of Literary Theory Articles (2008), 2(2)
X

@article{koepsell2008neuroscience,
title={Neuroscience and the Study of Literature: Some Thoughts on the Possibility of Transferring Knowledge},
author={Koepsell, Kilian and Spoerhase, Carlos},
journal={JLT Articles},
volume={2},
number={2},
year={2008}
}

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Learning sparse generative models of audiovisual signals

European Conference on Signal Processing (2008)
X

@inproceedings{monaci2008learning,
title={Learning sparse generative models of audiovisual signals},
author={Monaci, Gianluca and Sommer, Friedrich T and Vandergheynst, Pierre},
booktitle={Signal Processing Conference, 2008 16th European},
pages={1–5},
year={2008},
organization={IEEE}
}

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Data sharing for computational neuroscience

Neuroinformatics (2008), 6(1), 47-55
X

@article{teeters2008data,
title={Data sharing for computational neuroscience},
author={Teeters, Jeffrey L and Harris, Kenneth D and Millman, K Jarrod and Olshausen, Bruno A and Sommer, Friedrich T},
journal={Neuroinformatics},
volume={6},
number={1},
pages={47–55},
year={2008},
publisher={Springer}
}

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Sparse representation of sounds in the unanesthetized auditory cortex

PLoS Biology (2008), 6(1)
X

@article{hromadka2008sparse,
title={Sparse representation of sounds in the unanesthetized auditory cortex},
author={Hrom{\’a}dka, Tom{\’a}{\v{s}} and DeWeese, Michael R and Zador, Anthony M},
journal={PLoS biology},
volume={6},
number={1},
pages={e16},
year={2008},
publisher={Public Library of Science}
}

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2007

Learning horizontal connections in a sparse coding model of natural images

Advances in Neural Information Processing Systems (NIPS 2007), 505-512
X

@inproceedings{garrigues2007learning,
title={Learning horizontal connections in a sparse coding model of natural images},
author={Garrigues, Pierre and Olshausen, Bruno A},
booktitle={Advances in Neural Information Processing Systems},
pages={505–512},
year={2007}
}

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Feedforward excitation and inhibition evoke dual modes of firing in the cat's visual thalamus during naturalistic viewing

Neuron (2007), 55(3), 465-478
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@article{wang2007feedforward,
title={Feedforward excitation and inhibition evoke dual modes of firing in the cat’s visual thalamus during naturalistic viewing},
author={Wang, Xin and Wei, Yichun and Vaingankar, Vishal and Wang, Qingbo and Koepsell, Kilian and Sommer, Friedrich T and Hirsch, Judith A},
journal={Neuron},
volume={55},
number={3},
pages={465–478},
year={2007},
publisher={Elsevier}
}

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Bunte Theorien für graue Zellen

Spektrum.de
X

@MISC{sommer2007bunte,
author={Sommer, Friedrich},
title={Bunte Theorien für graue Zellen},
editor={Spektrum.de},
month={May},
year={2007},
note = {\href{http://http://www.spektrum.de/magazin/bunte-theorien-fuer-graue-zellen/872207/}{Spektrum.de} {[Online; posted 18-May-2007]}},
}

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A network that uses few active neurones to code visual input predicts the diverse shapes of cortical receptive fields

Journal of Computational Neuroscience (2007), 22(2), 135-146
X

@article{rehn2007network,
title={A network that uses few active neurones to code visual input predicts the diverse shapes of cortical receptive fields},
author={Rehn, Martin and Sommer, Friedrich T},
journal={Journal of computational neuroscience},
volume={22},
number={2},
pages={135–146},
year={2007},
publisher={Springer}
}

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Bilinear models of natural images

Human Vision and Electronic Imaging XII (2007), 6492
X

@inproceedings{olshausen2007bilinear,
title={Bilinear models of natural images},
author={Olshausen, Bruno A and Cadieu, Charles and Culpepper, Jack and Warland, David K},
booktitle={Human Vision and Electronic Imaging XII},
volume={6492},
pages={649206},
year={2007},
organization={International Society for Optics and Photonics}
}

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2006

Non-Gaussian membrane potential dynamics imply sparse, synchronous activity in auditory cortex

Journal of Neuroscience (2006), 26(47), 12206-12218
X

@article{deweese2006non,
title={Non-Gaussian membrane potential dynamics imply sparse, synchronous activity in auditory cortex},
author={DeWeese, Michael R and Zador, Anthony M},
journal={Journal of Neuroscience},
volume={26},
number={47},
pages={12206–12218},
year={2006},
publisher={Soc Neuroscience}
}

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Storing and restoring visual input with collaborative rank coding and associative memory

Neurocomputing (2006), 69(10)
X

@article{rehn2006storing,
title={Storing and restoring visual input with collaborative rank coding and associative memory},
author={Rehn, Martin and Sommer, Friedrich T},
journal={Neurocomputing},
volume={69},
number={10},
pages={1219–1223},
year={2006},
publisher={Elsevier}
}

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Factorial coding of natural images: how effective are linear models in removing higher-order dependencies?

Journal of the Optical Society of America (2006), 23(6), 1253-1268
X

@article{bethge2006factorial,
title={Factorial coding of natural images: how effective are linear models in removing higher-order dependencies?},
author={Bethge, Matthias},
journal={JOSA A},
volume={23},
number={6},
pages={1253–1268},
year={2006},
publisher={Optical Society of America}
}

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Can neural models of cognition benefit from the advantages of connectionism?

Behavioral and Brain Sciences (2006), 29
X

@article{sommer2006neural,
author = {Sommer, Friedrich and Kanerva, Pentti},
year = {2006},
month = {02},
pages = {86 – 87},
title = {Can neural models of cognition benefit from the advantages of connectionism?},
volume = {29},
booktitle = {Behavioral and Brain Sciences}
}

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2005

Maximising sensitivity in a spiking network

Advances in Neural Information Processing Systems (NIPS 2005), 121-128
X

@inproceedings{bell2005maximising,
title={Maximising sensitivity in a spiking network},
author={Bell, Anthony J and Parra, Lucas C},
booktitle={Advances in neural information processing systems},
pages={121–128},
year={2005}
}

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How close are we to understanding V1?

Neural Computation (2005), 17(8), 1665-1699
X

@article{olshausen2005close,
title={How close are we to understanding V1?},
author={Olshausen, Bruno A and Field, David J},
journal={Neural computation},
volume={17},
number={8},
pages={1665–1699},
year={2005},
publisher={MIT Press}
}

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Synfire chains with conductance-based neurons: internal timing and coordination with timed input

Neurocomputing (2005), 65, 449-454
X

@article{sommer2005synfire,
title={Synfire chains with conductance-based neurons: internal timing and coordination with timed input},
author={Sommer, Friedrich T and Wennekers, Thomas},
journal={Neurocomputing},
volume={65},
pages={449–454},
year={2005},
publisher={Elsevier}
}

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Computing with inter-spike interval codes in networks of integrate and fire neurons

Neurocomputing (2005), 65, 415-420
X

@article{george2005computing,
title={Computing with inter-spike interval codes in networks of integrate and fire neurons},
author={George, Dileep and Sommer, Friedrich T},
journal={Neurocomputing},
volume={65},
pages={415–420},
year={2005},
publisher={Elsevier}
}

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Receptive field structure varies with layer in the primary visual cortex

Nature Neuroscience (2005), 8(3), 372-379
X

@article{martinez2005receptive,
title={Receptive field structure varies with layer in the primary visual cortex},
author={Martinez, Luis M and Wang, Qingbo and Reid, R Clay and Pillai, Cinthi and Alonso, Jos{\’e}-Ma{\~n}uel and Sommer, Friedrich T and Hirsch, Judith A},
journal={Nature neuroscience},
volume={8},
number={3},
pages={372–379},
year={2005},
publisher={Nature Publishing Group}
}

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